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CaInitially Posted: August 24, 2009
Revised/Updated:
November 9, 2009 |
Copyright ©
2009-2010
Chester R. Cooper, Jr. |
BIOL
6988: Seminar in Biological
Sciences
Fall 2009 Semester, CRN 40060
[Spring
Semester Seminar Web Page]
Course Instructor: Dr. Chet
Cooper, Professor, Department of Biological Sciences
Day/Time: Friday, 12:00 PM - 12:50 PM
Location:
Ward
Beecher Science Hall, Room 4043
(Note:
Some seminars will be presented at other locations than WBSH
4043. Please check the course schedule for specific locations,
especially presentations
given by non-YSU faculty.)
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Quick Links to Weekly Seminars
Dr. Cooper's Office Location:
Ward
Beecher Science Hall, Room 3016
(PLEASE NOTE:
Dr. Cooper's office is located in a secured wing of the building.
You will need to use the telephone on the wall to the left of the
secured glass doors to dial his extension [x1361] and he will come and
escort you to his office. DO NOT
ask others to let you in the secured area without an escort!)
Dr. Cooper's Contact Information:
Email, crcooper01@ysu.edu
Telephone/Voice Mail, 330.941.1361
Dr. Cooper's Office Hours:
(subject
to change/cancellation due to unforeseen circumstances)
Mondays and
Fridays (8/24/09 through 12/04/09)
9:00
AM - 10:30 AM
[Please Note: No
office hours will be held on the following Fridays: 9/11, 10/9, 11/6,
and 11/13]
Wendesdays, (8/26/09
through 12/02/09)
10:00
AM - 12:00 PM
[Please Note: No
office hours will be held on the following Wednesdays: 9/2 and 10/7]
Seminar/Course Schedule
(subject
to change/cancellation; please check back periodically for up-to-date
schedule)
August 28th
Introduction
to Course
September 4th
Introduction
to Maag Library Resources
All students
should report to the instruction room on the fourth floor of Maag
Library. There, Ms. Cynthia Harrison, Science Librarian Liason,
will provide a short hands-on workshop on available literature search
rescources available to YSU students.
Attendance is mandatory!
September 11th
Facutly Presentor: Dr. David Asch, Associate Professor
Topic-Related Article:
- Arnett, D. R., et al. 2009. Catabolite
repression directly affects transcription of the qa-y gene of Neurospora crassa. Fungal Genet Biol
46:
377-380. [OhioLink]
Facutly Presentor: Dr. Michael Butcher, Assistant
Professor
Topic-Related Articles:
- Blob, R. W. and A. A.
Biewener. 1999. In vivo locomotor strain in the hindlimb
bones of Alligator
mississippiensis and Iguana iguana: implications for the evolution of
limb bone safety factor and non-sprawling limb posture. J Exp Biol 202: 1023-1046. [PDF] Note:
A
PDF document can be downloadedfrom this web page. Look for the
appropriate citation.
- Butcher, M. T., et al.
2008. In vivo strains in the femur of river cooter turtles (Pseudemys concinna) during
terrestrial locomotion: tests of force-platform models of loading
mechanics. J Exp Biol
211: 2397-2407. [FullText] Note:
A
PDF document is also available from this web page.
*****************************************************************************************
Facutly Presentor: Dr.
Ian Renne, Assistant Professor
Topic-Related Article:
- Renne, I. M., et al.
2006. Shifts in grassland invasibility: effects of soil resources,
disturbance, compostion, and invader size. Ecology 87: 2264-2277. [FullText/PDF]
Facutly Presentor: Dr. Jonathon Caguiat, Assistant
Professor
Topic-Related Article(s):
- Holmes, A., et al. 2009. Comparison of two
multimetal resistant bacterial strains: Enterobacter sp. YSU and Stenotrophomonas maltophilia ORO2.
Curr Microbiol (in
press) [OhioLink]
- Jasenec, A., et al. 2009. Proteomic
profiling of L-cysteine induced
selenite resistance in Enterobacter sp.
YSU. Proteome Sci 7: 30 [FullText/PDF]
- Müller S., et al. 1997. The path of
unspecific incorporation
of selenium in Escherichia coli.
Arch Microbiol 168: 421-427. [OhioLink]
- Bébien,
M.,
et al.
2002. Involvement of
superoxide dismutases in the response of Escherichia coli to selenium
oxides. J Bacteriol 184:
1556–1564. [PDF]
October 2nd
Facutly Presentor: Dr. Carl Chuey, Professor
Topic-Related
Article(s):
PLEASE NOTE: Dr. Atwood is a recent YSU
biology graduate who studied under Dr. Chuey.
- J. J. Atwood and B. A. Allen. 2009. A
synopsis of the Orthotrichum strangulatum complex
(Orthotrichaceae). The
Bryologist 112:
208-220. [OhioLink]
- J. J. Atwood. 2009. A taxonomic revision
of Schlotheimia subg. Stegotheca (Orthotrichaceae).
The Bryologist
112:
290-300. [OhioLink]
- J. J. Atwood.
2009. New records of mosses from Pennsylvania. Evansia 26: 7-9. Note: This document is not available
electronicallly. Students may retrieve the orginal from Dr.
Cooper and make a photocopy for their own use.
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Facutly
Presentor: Dr. Carl
Sims, Assistant Professor
Topic-Related Article:
- C. Sims et al. 2008. Sex, Age, and
Regional Differences in L-Type Calcium Current Are Important
Determinants of Arrhythmia Phenotype in Rabbit Hearts With Drug-Induced
Long QT Type 2. Circ
Res 102: e86-e100. [FullText] Note: A PDF document is also
available from this web page.
October 9th
Facutly Presentor: Dr. Thomas Diggins, Associate
Professor
Topic-Related Article(s):
- Diggins, T. P.and Newman, A.
M. 2009. Environmental and spatial influences on benthic
community composition in wooded headwater streams in Zoar Valley, New
York, USA. Hydrobiologia
630: 313 -
326 [OhioLink]
- E. K. Pfeil et al. 2007.
Distribution, composition, and orientation of down deadwood in riparian
old-growth woodlands of Zoar Valley Canyon, western New York State,
USA. Forest Ecol Mgmt 239: 159-168 [OhioLink]
Special
Guest Presentor: Dr.
Nazeli Vardanyan
Location of Presentation:
Bresnahan Rooms I
and II
Kilcawley
Center |
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Title: Armenian Environmental
Situation:
Problems and Ways of Solution
Brief Biography: Dr. Vardanyan is the
Director of “Armenian Forests” [web link], an non-government
organization whose main activities are forestation, reforestation and
forest protection in Armenia. She supervises projects on 740
hectares of reforestation in Armenia, and she has also been
coordinator of a working group on drafting of a forest policy for
Armenia. She is also president of “GOY”, an environmental/legal
organization whose main activities are environmental education,
environmental rights protection, lobbying, public participation in
decision-making and access to justice on environmental issues.
She is a licensed attorney in the Republic of Armenia. She is a member
of both the Chamber of Advocates of the Republic of Armenia and of the
International Bar Association. As an international expert on
environmental law, Dr. Vardanyan has testified at numerous
international conferences and participated in drafting several
international environmental conventions, e.g. the Convention on the
Rights of the Child, the Aarhus Convention, and other agreements. She
is a lecturer at the Russian-Armenian University in the capital,
Yerevan, and coordinator of the Human Rights and Sustainable
Development Working Group of the Northern Alliance for Sustainable
Development.
October 23rd
Facutly Presentor: Dr. Diana Fagan, Associate Professor
Topic-Related Articles:
- Brinchmann,
J.
E. 2008. Expanding autologous multipotent mesenchymal bone
marrow stromal cells. J Neurol Sci 265: 127–130. [OhioLink]
- Hone, R.
and C. Keane. 1974. A clinical study of infections caused
by methicillin-resistant Staphylococcus aureus. Infect 2: 213 - 217. [OhioLink]
October 30th
Facutly Presentor: Dr. Carl Johnston, Associate
Professor
Topic-Related Article(s):
- Bamforth, S. M. and
I. Singleton, Ian. 2005. Bioremediation of polycyclic
aromatic hydrocarbons: current knowledge and future directions. J Chem Technol
Biotechnol 80:
723 - 736.
[OhioLink]
November 6th
Facutly
Presentor: Dr.
John Usis, Professor
Topic: Experimental Design
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Facutly Presentor: Dr. Chet Cooper, Professor
Title: Morphogenesis in Penicillium marneffei
Topic-Related Articles:
- Cooper, C. R., Jr.,
and N. Vanittanakom. 2008. Insights into the pathogenicity
of Penicillium
marneffei. Future Microbiol 3: 43-55. [PDF]
- J. M. Chandler et al. 2008. Protein
profiling of the dimorphic, pathogenic fungus, Penicillium marneffei. Proteome Sci
6:17. [BioMedCentralt]
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Facutly
Presentor: Dr. Johanna
Krontiris-Litowitz,
Professor
Topic-Related Article:
- Mukherjee, D. and S
Sen. 1990. Collagen phenotypes during development and
regression of myocardial hypertrophy in spontaneously hypertensive rats. Circulation Research 67: 1474-1480. [PDF]
November 13th
Facutly Presentor: Dr. Robert Leipheimer, Professor
Title:
Topic-Related Article(s):
*****************************************************************************************
Facutly
Presentor: Dr.
Gary Walker, Professor
Topic-Related Article(s):
- Walker, G.
R., et
al. 1999.
Identification of autoantibodies associated with rippling muscles and
myasthenia gravis that recognize skeletal muscle proteins: possible
relationship of antigens and stretch-activated ion channels. Biochemical and
Biophysical Research Communications264: 430-435. [OhioLink]
- Watkins, T.
C., et
al. 2006.
Identification of skeletal muscle autoantigens by expression library
screening using sera from autoimmune rippling muscle disease (ARMD)
patients. Journal of
Cellular Biochemistry 99:
79 - 87. [OhioLink]
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page}
November 20th
Facutly Presentor: Dr. Heather Lorimer, Associate
Professor
Topic-Related Article(s):
- Lecrenier, N. and
Foury, F. 2000. New features of mitochondrial DNA
replication system in yeast and man. Gene 246: 37-48. [OhioLink]
- Ling, F. et al. 2007. DNA recombination-initiation
plays a role in the extremely biased inheritance of yeast [rho–] mitochondrial DNA that contains the
replication origin ori5. Molecular
and Cellular Biology 27: 1133-1145. [ASM Journals]
Thanksgiving
Holiday - NO CLASS
Facutly Presentor: Dr. Xiangjia Min, Assistant
Professor
Title:
Secretome
Prediction in Eukaryotes
Topic-Related Articles:
- Klee, E. W. and L. B. Ellis.
2005 . Evaluating eukaryotic secreted protein prediction. BMC Bioinformatics 6: 256. [BioMedCentral]
- Tsang, A., et. al. 2009.
Analytical and computational approaches to define the Aspergillus niger secretome.
Fungal Genet Biol 46 (Suppl 1):
S153-S160. [OhioLink]
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page}
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Quick
Links to
Syllabus
Sections
(The above links were
corrected on 9/18/09)
Course
Description
This course will
expose students to a diverse range of research topics explored by
departmental faculty and students, as well as individuals from other
institutions.
Course Goals
and Objectives
BIOL
6988 will help prepare students for professional careers and aid them
in the selection of a research topic/mentor. As such, this couse is
designed to help students strive towards the following specific goals:
- learn
the fundamental concepts underlying selected biological systems
- recognize
the importance of proper public dissemination of information
- learn
to write effectively about biology-related topics
Students who
successfully complete BIOL 6988 will be provided the tools needed for
continued learning in the area of their choice by achieving the
following specific objectives:
- learning
scientific terminology
- understand
the real-world application of the scientific method
- efficiently
and effectively communicate scientific knowledge
- understand
the fundamentals of particular biological processes
- select
an area of concentration or a specific research project/mentor to
complete their graduate degree
Available
Resources
Electronic
Files. Any electronic files
of journal articles presented in this
syllabus are made available soley for the personal educational use of
students enrolled in this course. Their use beyond this specific
intent may violate applicable copyright restrictions. When
possible, links to pages where articles can be downloaded by the
student alone are posted.
Writing
Center. This
course will require students to write a number of
summaries. For those individuals desiring help in improving their
writing skills, use of the YSU
Writing Center is strongly recommended. Their services are
free. Appointments can be scheduled or walk-in visits are
available. The Writing
Center can be
contacted by telephone [330.941.3055] or
by email [wcenter@cc.ysu.edu].
Computer/Media. The YSU Tech Desk is available for
students needing help with their personal computers or networking
services at YSU (Phone: 330.941.1595 Email: techdesk@cc.ysu.edu).
Also, students needing help or resources to address their
multimedia and computing needs should contact the pertinent party in
YSU's
Media and Academic
Compuring (M&AC) department.
Disability Statement
In
accord with the Americans with
Disabilities Act, anyone requiring special adaptations or
accommodations should privately inform Dr. Cooper as soon as possible.
In accordance with University procedures, if you have a documented
disability and require accommodations to obtain equal access in this
course, please contact the Office of
Disability Services (telephone 330.941.1372) in the Center for Student Progress
at the beginning of the semester or when given an assignment for which
an accommodation is required. Students with disabilities must verify
their eligibility through the Office of Disability Services.
Persons enrolled in this course and currently having a documented
disability must notify Dr. Cooper of their needs no later than
September 11, 2009. Students with disabilities are reminded that
in addition to certain rights and privileges covered by law and
University policy, they also have obligations and responsibilities that
must be met. Students are strongly encouraged to review these
rights and responsibilities as outlined on the Disability Services
Office web page.
Grading
A student's grad for this course will be based upon
the following items:
- Attendance - Attendance of
seminar is mandatory. This grade component comprises 130 points towards
a
students total score. Excused absences are subject to Dr.
Cooper's perogative. For each unexcused absence, ten (10) points
will be deducted from a student's score.
- Participation - A total
of 70 points have been allotted to this
grade
component. The
amount of points awarded to a student is at the Dr. Cooper's
discretion.
Students
are expected to have read the material provided before each seminar and
use it as the basis for interaction with the seminar speaker. Failure
to ask
pertinent questions or make suitable comments during the
seminar will results in a deduction of points from the students total
score.
Journal Article Summaries -
Students will submit a summariy of any single article provided by a
faculty member for background reading. Students must submit ten
(10) summaries, each from a different presentor. Each summary is
worth 15 points and must
be: i) no more than 200 words in length, and ii) submitted to Turnitin.com (see below) no later than
11:59 AM on the day of the corresponding faculty member's
presentation. Late
submissions will not be accpeted!!!!!
IMPORTANT
NOTICE! Be sure to place your summary in the appropriate
folder in the Turnitin.com course page. The correct folder is the
one named for the faculty member whose journal article you have
summarized. Placing your summary in the incorrect folder will be
considered as not having turned in the assignment!!!!
Each
summary will be graded mainly upon content and grammar/style.
Each
summary should briefly address the following questions:
- What
questions were addressed by this study?
- How
were these questions addressed? What specific approaches/methods were
used?
- What
assumptions were made? Were these reasonable and testable?
- What
were the major findings of the study?
- What
questions remain unanswered and how might these be sought?
- What
did you find particularly interesting about the presentation?
- What improvements to
the study or the presentation might you suggest?
Grading Scale
A student's grade for this course will be based upon
the following scale:
- 315 - 350 points
Grade of A
- 280 - 314 points Grade of B
- 245 - 279 points Grade of C
- 210 - 244 points Grade of D
- 209 points or less Grade of F
This
scale
is absolute, i.e., there is no curving!
Turnitin.com
Your
journal article summaries for this course
must be submitted electronically to Turnitin.com, a web site that
reviews all submissions for plagiarism. To begin the process of
electronic submission, students need to login to Turnitin.com. To
briefly summarize the process, students should point their web browser
to http://www.turnitin.com.
(Do not use the period [“.”] at the end of this address.). Follow
the process stated in the Turnitin Student User Guide to join my class,
“BIOL 6988: Seminar in Biological Sciences (Fall 2009)”. The
class/account ID
is 2820283
and the join/enrollment password is
“biol6988” (“biol” is all
in lower case; the password is case-sensitive). Once you have
established your account, you are now ready to submit copies of your
written assignments.
IMPORTANT
NOTICE!
Be sure to place your summary in the appropriate folder in the
Turnitin.com course page. The correct folder is the one named for
the
faculty member whose journal article you have summarized. Placing
your
summary in the incorrect folder will be considered as not having turned
in the assignment!!!!
Students are required
to submit a signed and completed Syllabus Acknowledgement Form to Dr.
Cooper no later than 5:00 PM on September 11, 2009. This form can
be
accessed as a PDF document through the button link below. Failure
to properly submit this form will
cause Dr. Cooper to withhold the recording of any scores/grades for
student(s) who do not comply with this requirement.
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Viewing
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documents, their structural integrity seems best served by Netscape 7.2 and above.
Copyright © 2009
Chester R. Cooper, Jr.
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