bacterial types
Colorized electron micrograph depticting three common forms of bacateria (courtesy of www.denniskunkel.com



BIOL 3702: Microbiology

Summer 2006 Semester
First 6-Week Session
Lecture Course Code 0340
Laboratory Course Code 0341

Course Instructors:
Dr. Chet Cooper and Dr. David Asch
Associate Professors, Department of Biological Sciences
Lecture Day/Time: Monday, Wednesday and Friday, 10:00 AM - 1:30 PM
Location: Ward Beecher Science Hall Auditorium, Room 3022

Laboratory Day/Time: Monday and Wednesday, 8:00 AM - 10:15 AM
Location: Cushwa Hall, Room 2121


Posted: June 14, 2006

"Welcome to Microbiology"

dr c
Dr. Chet Cooper

Welcome to BIOL 3702.  We are your instructors for this semester, Dr. Chet Cooper and Dr. David Asch.  BIOL 3702 is four semester-hour upper-division course at Youngstown State University (YSU)  intended for undergraduate students majoring in biology, but students in other majors may also find this course quite beneficial.

As your instructors, we are wholly committed to providing you a sound education in the foundations of microbiolgoy.  With the same commitment on your part, I guarantee that your experiences in this course will give you a different and accurate perspective of the role that microbes play in the environment as well as in human affairs.
asch
Dr. David Asch

We very much look forward to an exceptional enjoyable semester as your  instructors.  Should you have any questions or comments about anything related to this, please be sure to contact either or us.

Best Wishes for a Great Semester in Microbiology!
                                                                

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Dr. Cooper's Contact Information:

Office Hours:

Mon. and Wed., 1:40 PM to 2:30 PM
Tue. and Thurs., 8:00 AM to 8:50 AM
Also by appointment

Office Location:

Ward Beecher Science Hall, Room 4015


Telephone:   330.941.1361


Email:   crcooper01@ysu.edu


Dr. Asch's Contact Information:


Office Hours:

To Be Announced

Office Location:

Ward Beecher Science Hall, Room 3003


Telephone:   330.941.3187


Email: dkasch@ysu.edu


Course Description:

(as published on page 243 of the 2005-2006 YSU Undergraduate Bulletin)

BIOL 3702/3702L. Microbiology.  Fundamentals of the biology of microbes.  The principles of microbial structure, function, reproduction, metabolism, genetics, phylogeny, host-parasite relationships, and immunity.  Fundamental technical skills acquired through laboratory experiences.  Three hours lecture, three hours laboratory.  Prereq.  BIOL 2601 and concurrent enrollment in BIOL 3702L.  4 s.h.+ 0 s.h.

The BIOL 3702 curriculum has been devised to encompass the recommendations set forth by the American Society for Microbiology (Click here to go to the web page describing these recommendations).  By implementing these recommendations, BIOL 3702 is a broadly effective and cohesive undergraduate course in microbiology.  As designed, BIOL 3702 provides a mixed lecture/laboratory educational experience focused upon the rudimentary concepts of microbiology.  BIOL 3702 not only prepares students for more advanced courses in the microbiological sciences, but also provides knowledge essential to many diverse careers in biology, e.g., biotechnology, biomedical research, etc.  This course also serves students desiring a career in medicine, dentistry, podiatry, etc.

Students who enroll in BIOL 3702 must concurrently enroll in a laboratory section, BIOL 3702L, as well.  The laboratory component of this BIOL 3702 is an integral part of Microbiology.  There are no exceptions to enrolling in BIOL 3702L, although there may be some consideration for work previously accomplished by students repeating Microbiology (see course instructor for information). Also, there is a fee for BIOL 3702L which helps defray the costs of materials used in the laboratory.

In addition, the laboratory section of Microbiology, BIOL 3702L, has been designated as an approved Writing Intensive component of the YSU General Education Requirement.



Course Goals and Objectives:

BIOL 3702 will prepare students for professional careers that utilize the principles of the microbiological sciences through the mastery of the following specific objectives:

  • learn the concepts of microbial anatomy, growth, metabolism, and genetics
  • identify virulence factors associated with microbial diseases
  • realize the foundations of microbial taxonomy and phylogeny
  • appreciate the role of microbes in human affairs
  • understand the mechanism of action for common antibiotics
  • comprehend the basis of the host-response to microbial infection
  • recognize the importance of proper public dissemination of information
  • accurately perform basic laboratory procedures
  • practice data acquisition, analysis, and reporting
  •  learn to write effectively about microbiology-related topics

Students who successfully complete BIOL 3702 will be provided the tools needed for continued learning in the area of microbiology by achieving the following specific objectives:

  • learning scientific terminology
  • implement the scientific method
  • efficiently and effectively communicate scientific knowledge
  • understand the fundamentals of the microbiological sciences
  • apply problem-solving techniques
  • work collaboratively with others


Course Materials:

Required TextbookMicrobiology, 6th edition, by L. M. Prescott,
J. P. Harley, and D. A. Klein.  2005.  WCB McGraw-Hill.

Required Laboratory Manual: Laboratory Exercises in Microbiology, 6th Edition, by J. P. Harley.  2005.  WCB McGraw-Hill.

Required Laboratory Materials: Students must acquire a laboratory coat (or smock) and safety glasses to be permitted to participate in all laboratory activities.  

Optional Study Guide: Student Study Guide for Use with Microbiology, 5th edition, by L. M. Sherwood.  2001.  WCB McGraw-Hill.



Grade Components:

A student’s final grade in BIOL 3702 will be based upon scores earned in four lecture examinations, two quizzes, two in-class assignments, and various laboratory assignments.   Each examination is worth 90 points, whereas each quiz and each in-class assignmetn is worth 10 points.  The laboratory components of the course is comprise of 100 points broken down as follows: three quizzes at 10 points each, three skills tests (two at 5 points each and one of 20 points), various laboratory reports (35 points total), and 5 points towards laboratory citizenship.  Hence there are a total of 500 points in this course.

Students who are absent from an examination, quiz, or in-class assignment will have a score of “0” recorded.  No exemptions to taking the examination on the scheduled date will be given except in cases of extreme circumstances.  The decision of whether or not to grant an exemption is entirely at the discretion of the instructor and is not subject to further appeal.

No opportunities will be granted for earning extra credit.  Student initiated requests for extra credit opportunities will not be entertained and may be acidly received. 

Grading Scale.  The following scale will be used to assign final grades for this course:

Final Grade Total Points
A (90% or greater) 450 points or more
B (80 – 89 %) 400 – 449 points
C (70 – 79%) 350- – 399 points
D (60 – 69%) 300 – 349 points
F (59% or less) 299 points or less

This grading scale is absolute.  This is no "curving" of grades.     
      


Attendance:

A record of attendance will not be kept.  However, students are strongly encouraged to attend each lecture.  The lecture for this course begins promptly at 10:00 AM on Mondays, Wednesdays, and Fridays throughout the semester.   The laboratory section meets promptly at 8:00 AM on Mondays and Wednesdays.  (NOTE: This course operates on “Ward Beecher Time” which may or may not correlate to the time that exists at other places on campus.  Students are strongly encouraged to synchronize their timepieces).

On those dates for which a quiz, in-class assignment, or examination is scheduled, students who are late may not be permitted to take the quiz.  This is entirely at Dr. Cooper's or Dr. Asch's discretion.

Moreover, e
xcept for extenuating circumstances, it is generally unacceptable for a student to request to take an examination at a time other than the scheduled date.  Having a second examination the day before, the day after, or on the same day is absolutely certain not to evoke any sympathy from either Dr. Cooper or Dr. Asch.  However, Dr. Cooper and Dr. Asch are willing to listen  other reasons that a student may deem to be extenuating.  The decision regarding the student's reasoned argument/request for a change in the examination date/time is solely at Dr. Cooper's or Asch's discretion and, once rendered, is final.


Resources Used By The Course Instructors:

Unless otherwise noted by Dr. Cooper or Dr. Asch, all material presented to students in this course represents either i) selected portions of information contained within the course’s textbook(s) or supplementary material, ii) information published in the scientific literature, iii) current issues reported by the news media, or iv) knowledge otherwise commonly known to professional microbiologists or mycologists.  Dr. Cooper and Dr. Asch make no claim of “ownership” of facts and/or ideas presented in this course unless specifically noted.  All facts and/or ideas are used solely for educational purposes.  Dr. Cooper and Dr. Asch make every effort to appropriately attribute facts and/or ideas to their proper sources.



Academic Dishonesty:

Academic dishonesty, in any form, will not be tolerated in this course.

Students are urged to read the section on “Academic Honesty” as 
printed on page 40 of the YSU Undergraduate Bulletin, 2005-2006.  Students should also be aware of pertinent sections in The Code (the latter  is a PDF document).

Any student enrolled in BIOL 3702 shown to have committed academic dishonesty in this course is deemed solely accountable for his/her actions and will receive a final course grade of “F”.   Additional sanctions may also be sought, i.e., a recommendation by the instructor for dismissal of the student from the University.

Be aware that this policy includes unauthorized access of computer files associated with this course.  The web site files associated with BIOL 3702 are monitored for unauthorized access.  Entering these files even by “accident” will be considered a violation of academic integrity.


Other Responsibilities/Expected Behavior:

Electronic Communication/Data Storage Devices.  During lecture, all cellular telephones, pagers, or other electronic communication devices must be turned off or set in the quiet/vibration mode of operation.  Data storage devices (e.g., personal desk assistants, lap top computers, etc.) may be used during lectures and only if they do not cause distraction to other students or the course instructor.  Students failing to meet this expectation will be invited to leave the classroom until such time that they comply with this policy.

During examinations and quizzes, all electronic devices (including personal desktop assistants, computers, etc.) are strictly prohibited.  Students violating this policy will be suspected to have committed academic dishonesty.

Examinations and Quizzes.  Examinations are to be taken without assistance from other students.  If you are aware of any student cheating or having a copy of the current exam, please contact the instructor.  Academic dishonesty in any form will not be tolerated in this course.  Penalties for such action will be enforced.

Decorum.  At all times, students are expected to exhibit behavior appropriate for young (or even older) adults.  Such behavior is delimited by University policy.  Inappropriate behavior, including disrespect for Dr. Cooper or  Dr. Asch, is subject to expulsion from one or more lecture sessions without the opportunity to begin or complete the assigned exercises.  In cases of extremely inappropriate behavior, Dr. Cooper or Dr. Asch will recommend more severe sanctions (including dismissal from the University).

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Required CUE Mail Account:

All electronic communications with students enrolled in BIOL 3702 will only be made using the University’s CUE (Common University Email) Mail system.  All BIOL 4849 students must establish their CUE mail accounts if they have not done so already.  To activate your free CUE mail account, go the CUE Frequently Asked Questions section of the web page located at the following URL: http://helpdesk.ysu.edu/faqs.htm.  Please note that a CUE mail account does not have to supplant your current non-CUE mail service.  A feature of CUE mail is that all incoming messages can be forwarded to another email account.  Hence, you can retain your present services and still receive all communications from Dr. Cooper or Dr. Asch.
lecture
Go to Lecture Schedule for Summer Session
(click here for a PDF version of the lecture schedule)


lab
This button downloads a PDF version of the
the Laboratory Schedule for the Summer Session



Disability Statement:

In accordance with University procedures, students who have a documented disability and require accommodations to obtain equal acess in this course must contact Dr. Cooper privately to discuss the individual's specific needs.  Persons enrolled in this course and currently having a documented disability must notify Dr. Cooper of their needs no later than June 1, 2006.  In addition, students having a disability must be properly registered with the Disability Services Office (Beeghly Hall, Room 3310; telephone 330.941.1372).  Also, to be properly registered, a letter of accommodations verifying the student's eligibilty must be provided.  Individuals who develop a disability during the semester must notify Dr. Cooper within one week after being properly registered with the Disability Services Office.  Students with disabilities are reminded that in addition to certain rights and privileges covered by law and University policy, they also have obligations and responsibilities that must be met.  Students are strongly encouraged to review these rights and responsibilities as outlined on the Disability Services Office web page.


Lecture Calendar

(To download a PDF file containng the entire lecture calendar, click here)


Monday, May 22nd

  • Introduction to Biology 3702
  • Lecture Topic: The History and Scope of Microbiology

  • Assignment  Chapter 1, pages 1-15

Wednesday, May 24th


  • Lecture Topic: The Study of Microbial Structure: Microscopy and Specimen Preparation
  • Lecture Topic: Procaryotic Cell Structure and Function I
    Assignment: Chapter 3, pages 39-63 and 68-71

    Lecture Outline - Chapter 3 (PDF)

Friday, May 26th

  • Lecture Topic: Procaryotic Cell Structure and Function II
    Assignment: Chapter 3, pages 39-63 and 68-71

    Lecture Outline - See May 24th


  • Lecture Topic: Eucaryotic Cell Structure and Function I

  • Assignment: Chapter 4, pages 73-86 and 88-91

Monday, May 29th

Lecture Will Not Meet – Memorial Day Holiday


Wednesday, May 31st

Quiz I [10 points] – covers Chapters 1 through 3

  • Lecture Topic: Eucaryotic Cell Structure and Function II
    Assignment: Chapter 4, pages 73-86 and 88-91

    Lecture Outline - See May 26th


  • Lecture Topic: Microbial Nutrition

  • Assignment: Chapter 5, pages 93-104
     
    Lecture Outline - Chapter 5 (PDF)

Friday, June 2nd

Examination I [90 points] – covers Chapters 1 through 5

  • Lecture Topic: Microbial Growth
    Assignment: Chapter 6, pages 109-112, 114-117, and 118-131

    Lecture Outline - Chapter 6 (PDF)
  • Lecture Topic: Control of Microorganisms by Physical and Chemical Agents

Monday, June 5th
  • Lecture Topic: Metabolism: Energy, Enzymes, and Regulation
  • Lecture Topic: Metabolism: Energy Release and Conservation I

  • Assignment: Chapter 9, pages 167-179

    Lecture Outline - Chapter 9 (PDF)

Wednesday, June 7th

Quiz I [10 points] – covers Chapters 6 through 8
  • Lecture Topic: Metabolism: Energy Release and Conservation II

  • Assignment: Chapter 9, pages 179-197

    Lecture Outline - See June 5th

  • Lecture Topic: Metabolism: The Use of Energy in Biosynthesis

  • Assignment: Chapter 10, pages 199-204 and 209-216

Friday, June 9th


Examination II [90 points] – covers Chapters 6 through 10


Monday, June 12th

NOTE: In class assignments for the later half of the course, worth 20 points towards your final course score, will be given.  Specific details and due dates will be announced.

  • Lecture Topic: Genes in Bacteria
  • Assignment: Chapters 11, 12, and 13 (specific text pages to be announced)
    Lecture Outlines
Chapter 11 (PDF)

Chapter 12 (PDF)

Chapter 13 (PDF)

Wednesday, June 14th
  • Lecture Topic: The Viruses: Introduction and General Characteristics
  • Lecture Topic: The Viruses: Bacteriophages
    Assignment: Chapter 17, pages 371-385
  • Lecture Topic: The Viruses: Viruses of Eucaryotes
Friday, June 16th
  • Lecture Topic: Microbial Taxonomy
    Assignment: Chapter 19, pages 409--434

    Lecture Outline - Chapter 19 (PDF)
  • Lecture Topic: The Archaea

  • Assignment: Chapter 20, pages 437-451

    Lecture Outline - Chapter 20 (PDF)
  • Lecture Topic: Bacteria: The Deinococci and Nonproteobacteria Gram Negatives

  • Assignment
    : Chapter 21, pages 453-471

    Lecture Outline - Chapter 21-24 (PDF)

Monday, June 19th

  • Lecture Topic: Bacteria: The Proteobacteria
    Assignment: Chapter 22, pages 473-476, 485-494, and 500

    Lecture Outline - See June 16th

  • Lecture Topic: Bacteria: The Low G+C Gram Positives

  • Assignment: Chapter 23, pages 503-518

    Lecture Outline - See June 16th
  • Lecture Topic: Bacteria: The High G+C Gram Positives

  • Assignment: Chapter 24, pages 521-534

    Lecture Outline - See June 16th

Wednesday, June 21st

Examination III [90 points] – covers Chapters 11 through 13 and 16 through 22

  • Lecture Topic: Normal Microbiota and Nonspecific Host Resistance

  • Assignment: Chapter 31, pages 673-702

    Lecture Outline - Chapter 31 (PDF)
  • Lecture Topic: Specific (Adaptive) Immunity I

  • Assignment: Chapter 32, pages 705-715

    Lecture Outline - Chapter 32 (PDF)

Friday, June 23rd

  • Lecture Topic: Specific (Adaptive) Immunity II

  • Assignment: Chapter 32, pages 718-736

    Lecture Outline - See June 21st

  • Lecture Topic: Medical Immunology

  • Assignment: Chapter 33, pages 739-751

    Lecture Outline - Chapter 33 (PDF)

Monday, June 26th

  • Lecture Topic: Selected Human Diseases Caused By Viruses

  • Assignment: Chapter 38, pages 845-872

    Lecture Outline - Chapter 38 (PDF)

Wednesday, June 28th

  • Lecture Topic: Selected Human Diseases Caused By Bacteria

  • Assignment
    : Chapter 39, pages 875-910


    Lecture Outline - Chapter 39 (PDF)

Friday, June 30th

Examination IV [90 points] – covers Chapters 23, 24, 31 through 33, 38, and 39