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"Welcome to
Microbiology"

Dr. Chet Cooper
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Welcome to BIOL 3702. We are
your instructors for this semester, Dr. Chet
Cooper and Dr. David Asch. BIOL 3702 is four
semester-hour upper-division course at Youngstown State University
(YSU)
intended for undergraduate students majoring in biology, but students
in other majors may also find this course quite beneficial.
As your instructors, we are wholly
committed to providing
you a sound education in the foundations of microbiolgoy. With
the same commitment on your part, I guarantee that your experiences in
this course will give you a different and accurate perspective of the
role that microbes play in the environment as well as in human affairs.
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Dr. David Asch
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We very much
look forward to an exceptional enjoyable semester as
your instructors. Should you have any questions or
comments about anything related to this, please be sure to
contact either or us.
Best Wishes for a Great Semester in Microbiology!
Dr. Cooper's Contact Information:
Office Hours:
Mon. and Wed.,
1:40 PM to 2:30 PM
Tue.
and Thurs., 8:00 AM to 8:50 AM
Also
by appointment
Office Location:
Ward Beecher
Science Hall, Room 4015
Dr. Asch's Contact Information:
Office Hours:
To Be Announced
Office Location:
Ward Beecher
Science Hall, Room 3003
Course Description:
(as
published on page 243 of the 2005-2006 YSU Undergraduate Bulletin)
BIOL 3702/3702L. Microbiology. Fundamentals of the biology of
microbes. The principles of microbial structure, function,
reproduction, metabolism, genetics, phylogeny, host-parasite
relationships, and immunity. Fundamental technical skills
acquired through laboratory experiences. Three hours lecture,
three hours laboratory. Prereq. BIOL 2601 and concurrent
enrollment in BIOL 3702L. 4 s.h.+ 0 s.h.
The BIOL 3702 curriculum has been devised to encompass the
recommendations set forth by the American Society for Microbiology
(Click here to go to the web page describing these
recommendations). By implementing these recommendations, BIOL
3702 is a broadly effective and cohesive undergraduate course in
microbiology. As designed, BIOL 3702 provides a mixed
lecture/laboratory educational experience focused upon the rudimentary
concepts of microbiology. BIOL 3702 not only prepares students
for more advanced courses in the microbiological sciences, but also
provides knowledge essential to many diverse careers in biology, e.g.,
biotechnology, biomedical research, etc. This course also serves
students desiring a career in medicine, dentistry, podiatry, etc.
Students who enroll in BIOL 3702 must concurrently enroll in a
laboratory section, BIOL 3702L, as well. The laboratory component
of this BIOL 3702 is an integral part of Microbiology. There are
no exceptions to enrolling in BIOL 3702L, although there may be some
consideration for work previously accomplished by students repeating
Microbiology (see course instructor for information). Also, there is a
fee for BIOL 3702L which helps defray the costs of materials used in
the laboratory.
In addition, the laboratory section of Microbiology, BIOL 3702L, has
been designated as an approved Writing Intensive component of the YSU
General Education Requirement.
Course Goals and Objectives:
BIOL 3702 will prepare students for professional
careers that utilize the principles of the microbiological sciences
through the mastery of the following specific objectives:
- learn
the concepts of microbial anatomy, growth, metabolism, and genetics
- identify
virulence factors associated with microbial diseases
- realize
the foundations of microbial taxonomy and phylogeny
- appreciate
the role of microbes in human affairs
- understand
the mechanism of action for common antibiotics
- comprehend
the basis of the host-response to microbial infection
- recognize
the importance of proper public dissemination of information
- accurately
perform basic laboratory procedures
- practice
data acquisition, analysis, and reporting
- learn
to write effectively about microbiology-related topics
Students who successfully complete BIOL 3702 will be provided the tools
needed for continued learning in the area of microbiology by achieving
the following specific objectives:
- learning
scientific terminology
- implement
the scientific method
- efficiently
and effectively communicate scientific knowledge
- understand
the fundamentals of the microbiological sciences
- apply
problem-solving techniques
- work
collaboratively with others
Course Materials:
Required Textbook:
Microbiology, 6th
edition, by L. M. Prescott,
J. P. Harley, and D. A. Klein. 2005. WCB McGraw-Hill.
Required Laboratory Manual:
Laboratory Exercises in Microbiology,
6th Edition, by J. P. Harley. 2005. WCB McGraw-Hill.
Required Laboratory Materials:
Students
must acquire a laboratory coat (or smock) and safety glasses to be
permitted to participate in all laboratory activities.
Optional Study Guide: Student Study Guide for Use with
Microbiology, 5th edition, by L. M. Sherwood. 2001.
WCB McGraw-Hill.
Grade Components:
A
student’s final grade in BIOL 3702 will be based upon
scores earned in four lecture examinations, two quizzes, two in-class
assignments, and various laboratory assignments. Each
examination is worth 90 points, whereas each quiz and each in-class
assignmetn is worth 10
points. The laboratory components of the course is comprise of
100 points broken down as follows: three quizzes at 10 points each,
three skills tests (two at 5 points each and one of 20 points), various
laboratory reports (35 points total), and 5 points towards laboratory
citizenship. Hence there are a total of 500 points in this course.
Students who are absent from an examination, quiz, or in-class
assignment will have a score of “0”
recorded. No exemptions to taking the examination on the
scheduled
date will be given except in cases of extreme circumstances. The
decision of whether or not to grant an exemption is entirely at the
discretion of the instructor and is not subject to further appeal.
No
opportunities will be granted for earning extra credit. Student
initiated requests for extra credit opportunities
will not be entertained and may be acidly received.
Grading Scale.
The following scale will be used to assign final grades for this course:
| Final Grade |
Total
Points |
| A (90% or greater) |
450 points or more |
| B (80 – 89 %) |
400 – 449 points |
| C (70 – 79%) |
350- – 399 points |
| D (60 – 69%) |
300 – 349 points |
| F (59% or less) |
299 points or less |
This grading scale is absolute. This is no "curving" of grades.
Attendance:
A record of attendance
will not be
kept. However, students are strongly
encouraged to attend each lecture. The lecture for this course
begins promptly at 10:00 AM on Mondays, Wednesdays, and Fridays
throughout the
semester. The laboratory section meets promptly at 8:00 AM
on Mondays and Wednesdays. (NOTE:
This course operates on “Ward Beecher Time” which may or may not
correlate to the time that exists at other places on campus.
Students are strongly encouraged to synchronize their
timepieces).
On those dates for which a quiz, in-class assignment, or examination is
scheduled, students
who are late may not be permitted to take the quiz. This is
entirely at Dr. Cooper's or Dr. Asch's discretion.
Moreover, except
for extenuating circumstances,
it is generally unacceptable for a student to request to take an
examination at a time other than the scheduled date. Having a
second
examination the day before, the day after, or on the same day is
absolutely certain not to evoke any sympathy from either Dr. Cooper or
Dr. Asch.
However, Dr. Cooper and Dr. Asch are willing to listen other
reasons that a student may deem to be extenuating. The
decision
regarding the student's reasoned argument/request for a change in the
examination date/time is solely at Dr. Cooper's or Asch's discretion
and, once
rendered, is final.
Resources
Used By
The Course Instructors:
Unless otherwise noted by Dr.
Cooper or Dr. Asch,
all material presented to students in this course represents either i)
selected portions of information contained within the course’s
textbook(s)
or supplementary material, ii) information published in the scientific
literature, iii) current issues reported by the news media, or iv)
knowledge otherwise commonly known to professional
microbiologists or mycologists. Dr. Cooper and Dr. Asch make no
claim of
“ownership” of facts and/or ideas presented in this course unless
specifically noted. All facts and/or ideas are used solely for
educational purposes. Dr. Cooper and Dr. Asch make every effort
to
appropriately attribute facts and/or
ideas to their proper sources.
Academic
Dishonesty:
Academic
dishonesty, in any form, will not be tolerated in this course.
Students
are urged to read the
section on
“Academic Honesty” as printed
on page 40 of the YSU Undergraduate
Bulletin, 2005-2006.
Students should also be aware of pertinent sections in The Code (the latter
is a PDF document).
Any student enrolled in BIOL 3702
shown to have committed academic
dishonesty in this course is deemed solely accountable for his/her
actions and will receive a final course grade of “F”.
Additional sanctions may also be sought, i.e., a recommendation by the
instructor for dismissal of the student from the University.
Be aware that this policy includes unauthorized access of computer
files associated with this course. The web site files associated
with BIOL 3702 are monitored for unauthorized access.
Entering
these files even by “accident” will be considered a violation of
academic integrity.
Other
Responsibilities/Expected Behavior:
Electronic
Communication/Data
Storage Devices. During lecture, all
cellular telephones,
pagers, or other electronic communication devices must be turned off or
set in the quiet/vibration mode of operation. Data storage
devices (e.g., personal desk assistants, lap top computers, etc.) may
be used during lectures and only if they do not cause distraction to
other students or the course instructor. Students failing to meet
this expectation will be invited to leave the classroom until such time
that they comply with this policy.
During examinations and
quizzes, all electronic devices (including personal desktop
assistants, computers, etc.) are strictly prohibited.
Students violating this policy will be suspected to have committed
academic dishonesty.
Examinations
and Quizzes. Examinations
are to be
taken without assistance from other students. If you are aware of
any student cheating or having a copy of the current exam, please
contact the instructor. Academic dishonesty in any form will not
be tolerated in this course. Penalties for such action will be
enforced.
Decorum.
At all times,
students are expected to exhibit behavior appropriate for young (or
even older) adults. Such behavior is delimited by University
policy. Inappropriate behavior, including disrespect for Dr.
Cooper or Dr. Asch, is subject to expulsion from one or more
lecture sessions
without the opportunity to begin or complete the assigned
exercises. In cases of extremely inappropriate behavior, Dr.
Cooper or Dr. Asch will recommend more severe sanctions (including
dismissal from
the University).
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Required
CUE Mail Account:
All electronic
communications with students enrolled in BIOL 3702 will only be
made
using the University’s CUE (Common
University Email) Mail
system. All BIOL 4849 students must establish their CUE mail
accounts if they have not done so already. To activate your free
CUE mail account, go the CUE Frequently Asked Questions section of the
web page located at the following URL: http://helpdesk.ysu.edu/faqs.htm.
Please note that a CUE mail account does not have to supplant your
current non-CUE mail service. A feature of CUE mail is that all
incoming messages can be forwarded to another email account.
Hence, you can retain your present services and still receive all
communications from Dr. Cooper or Dr. Asch.
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Go to Lecture Schedule for Summer Session
(click here for a PDF version of the
lecture schedule)
This
button downloads a PDF version of the
the Laboratory Schedule for the Summer Session
Disability
Statement:
In accordance with
University procedures, students who have a documented disability and
require accommodations to obtain equal acess in this course must
contact Dr. Cooper privately
to discuss the individual's specific
needs. Persons enrolled in this course and currently having a
documented disability must notify Dr. Cooper of their needs no later
than June 1, 2006. In addition, students having a disability
must be properly registered with the Disability
Services Office (Beeghly Hall, Room 3310; telephone
330.941.1372). Also, to be properly
registered, a letter of
accommodations verifying the student's eligibilty must be
provided. Individuals who develop a disability during the
semester must notify Dr. Cooper within one week after being properly
registered with the Disability Services
Office. Students with disabilities are reminded that in addition
to certain rights and privileges covered by law and University policy,
they also have obligations and responsibilities that must be met.
Students are strongly encouraged to review these rights and
responsibilities as outlined on the Disability
Services Office
web page.
Lecture Calendar
(To
download a PDF file containng the entire lecture calendar, click here)
Monday,
May 22nd
- Introduction
to Biology 3702
- Lecture
Topic: The History and Scope of Microbiology
Assignment
Chapter 1, pages 1-15
Wednesday,
May 24th
- Lecture Topic: The Study of
Microbial Structure: Microscopy and Specimen Preparation
- Lecture Topic: Procaryotic
Cell Structure and Function I
Assignment: Chapter 3,
pages 39-63 and 68-71
Lecture Outline - Chapter 3 (PDF)
Friday,
May 26th
- Lecture Topic: Procaryotic
Cell Structure and Function II
Assignment: Chapter 3,
pages 39-63 and 68-71
Lecture
Outline - See May 24th
- Lecture Topic: Eucaryotic
Cell Structure and Function I
Assignment: Chapter 4,
pages 73-86 and 88-91
Monday,
May 29th
Lecture Will Not Meet – Memorial
Day Holiday
Wednesday,
May 31st
Quiz I [10
points] – covers Chapters 1 through 3
- Lecture
Topic: Eucaryotic Cell Structure and Function II
Assignment:
Chapter 4, pages 73-86 and 88-91
Lecture
Outline - See May 26th
- Lecture
Topic: Microbial Nutrition
Assignment:
Chapter 5, pages 93-104
Lecture Outline - Chapter 5 (PDF)
Friday,
June 2nd
Examination I [90 points] – covers
Chapters 1 through 5
- Lecture
Topic: Microbial Growth
Assignment:
Chapter 6, pages 109-112, 114-117, and 118-131
Lecture Outline -
Chapter 6 (PDF)
- Lecture
Topic: Control of Microorganisms by Physical and Chemical Agents
Monday,
June 5th
- Lecture
Topic: Metabolism: Energy, Enzymes, and Regulation
- Lecture
Topic: Metabolism:
Energy Release and Conservation I
Assignment:
Chapter 9, pages 167-179
Lecture Outline -
Chapter 9 (PDF)
Wednesday,
June 7th
Quiz I [10
points] – covers Chapters 6 through 8
- Lecture
Topic: Metabolism:
Energy Release and Conservation II
Assignment:
Chapter 9, pages 179-197
Lecture
Outline - See June 5th
- Lecture
Topic: Metabolism: The
Use of Energy in Biosynthesis
Assignment:
Chapter 10, pages 199-204 and 209-216
Friday, June 9th
Examination
II [90 points] – covers Chapters 6 through 10
Monday,
June 12th
NOTE: In
class assignments for the later half of the course, worth 20 points
towards your final course score, will be given. Specific details
and due dates will be announced.
- Lecture
Topic: Genes in Bacteria
- Assignment:
Chapters 11, 12, and 13 (specific text pages to be announced)
Wednesday,
June 14th
- Lecture
Topic: The Viruses:
Introduction and General Characteristics
- Lecture
Topic: The Viruses:
Bacteriophages
Assignment:
Chapter 17, pages 371-385
- Lecture
Topic: The Viruses:
Viruses of Eucaryotes
Friday,
June 16th
- Lecture
Topic: Microbial
Taxonomy
- Lecture
Topic: The Archaea
Assignment:
Chapter 20, pages 437-451
Lecture
Outline - Chapter 20 (PDF)
- Lecture
Topic: Bacteria: The
Deinococci and Nonproteobacteria Gram Negatives
Assignment:
Chapter 21, pages 453-471
Lecture
Outline - Chapter 21-24 (PDF)
Monday,
June
19th
- Lecture
Topic: Bacteria: The
Proteobacteria
Assignment:
Chapter 22, pages 473-476, 485-494, and 500
Lecture
Outline - See June 16th
- Lecture
Topic: Bacteria: The
Low G+C Gram Positives
Assignment:
Chapter 23, pages 503-518
Lecture
Outline - See June 16th
- Lecture
Topic: Bacteria: The
High G+C Gram Positives
Assignment:
Chapter 24, pages 521-534
Lecture
Outline - See June 16th
Wednesday,
June 21st
Examination
III [90 points] – covers Chapters 11 through 13 and 16 through 22
- Lecture
Topic: Normal
Microbiota and Nonspecific Host Resistance
Assignment:
Chapter 31, pages 673-702
Lecture
Outline - Chapter 31 (PDF)
- Lecture
Topic: Specific
(Adaptive) Immunity I
Assignment:
Chapter 32, pages 705-715
Lecture
Outline - Chapter 32 (PDF)
Friday,
June
23rd
- Lecture
Topic: Specific
(Adaptive) Immunity II
Assignment:
Chapter 32, pages 718-736
Lecture
Outline - See June 21st
- Lecture
Topic: Medical
Immunology
Assignment:
Chapter 33, pages 739-751
Lecture
Outline - Chapter 33 (PDF)
Monday,
June
26th
- Lecture
Topic: Selected Human
Diseases Caused By Viruses
Assignment:
Chapter 38, pages 845-872
Lecture
Outline - Chapter 38 (PDF)
Wednesday,
June 28th
- Lecture
Topic: Selected Human
Diseases Caused By Bacteria
Assignment:
Chapter 39, pages 875-910
Lecture
Outline - Chapter 39 (PDF)
Friday,
June
30th
Examination
IV [90 points] – covers Chapters 23, 24, 31 through 33, 38, and 39
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